- UBC Okanagan, Quantitative Ecology - QIIME 2 Forum
Situated in the heart of the Okanagan Valley, one of the most scenic regions in Canada, it offers an intimate learning environment and excellent opportunities for regional, national, and international scholarly activities Biology, at UBC's Okanagan campus, is housed in the vibrant Irving K Barber School of Arts and Sciences
- q2-SCNIC installation - Library Support - QIIME 2 Forum
Hi there, I #39;m new to using QIIME2 I have installation problem with q2-SCNIC now I fallowed this installation guide GitHub - lozuponelab q2-SCNIC: A QIIME2 plugin for running SCNIC and it has been installed successfu hellip;
- Topics tagged ancom-bc2
Topics tagged ancom-bc2 Topic Replies Views Activity da-barplot feature request Developer Discussion ancom-bc2 5 237 February 26, 2026 ANCOM-BC2 versions User Support ancom-bc2 2 54 February 15, 2026 Ancom-BC2 analysis along time series General Discussion ancom-bc2 4 114 September 24, 2025 Ancom-BC2 error: No features remained in your taxonomy Technical Support ancom-bc2 11 208 June 28, 2025
- PhD Opportunity - Soil Microbial Ecology - q2-jobs - QIIME 2 Forum
UTSA is a public research university and a Hispanic-Serving Institution located in scenic San Antonio, Texas The main campus, where the graduate position will be housed, enrolls ~34,000 students and has a diverse set of collaborative groups spanning ecology, microbiology, geosciences, and natural resource management
- PERMANOVA results significant, but differential abundance results . . .
Hello, I am performing a study about differences in microbial communities between two sample types in an Antarctic ecosystem According to PERMANOVA, there are significant differences between communities of the two sample types However, when performing differential abundance analysis (Tried ANCOM and LEFSE so far) and performing Holm p-value correction, I detect zero significantly different
- how to reference the plugins used - QIIME 2 Forum
I wanted to ask if anyone can help me to know how to cite the qiime plugins (permanova, shannon, observed features, evenness, faith phylogenetic tree, braycurtis, scenic plugin, taxa barplot, and picrust2) See this page for more details and an example (that covers some of the methods you mentioned):
- PhD position plant insect interaction in agricultural fields in Germany
The University of Kassel is a modern and growing University with round about 23 000 students The university’s wide range of expertise covers subjects in the natural, applied, cultural and social sciences At the University of Kassel, Faculty of Biology, Group Botany (Prof Dr Birgit Gemeinholzer), the following position is to be filled by 1th of April 2024 or later: Doctoral Researcher (m
- Diversity analysis with otu table and taxonomy data
Hi, I am beginning to use Qiime2, and I try to do the diversity analysis The aim is to discover the relationship between the diversity and the status Now, I receive some datasets from collaborators OTU_table ( otu id and the sample identify) OTU_mapping file (OTU_id, acc, full_name, taxonomy) Sample mapping file (ids, type, etc) According to the tutorial, I first generate a biom file with
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